Special Topics in Plant Biology and Conservation (470-0-1)

Topic

Application of Genomics

Instructors

Susan Strickler

Meeting Info

Technological Institute L150: Tues, Thurs 3:30PM - 4:50PM

Overview of class

Genomic data has surged in recent years, transforming biology and opening opportunities for exciting new questions. To leverage this data, a variety of skills not previously critical to biology are required. This course focuses on the theory and application of genomic technologies that can be applied across the tree of life. Linux command line and programming basics as well as data and code management best practices will be covered. Labs will train students how to use proper techniques with real data to avoid common pitfalls. In-class problems, hack-a-thons, and a final team project will enable students to apply the methods learned to their own questions in genomics. Students from all Colleges are welcome to enroll in the course and it is open to all interested advanced undergraduate and graduate students.

Registration Requirements

Students should have a basic understanding of biology and will need to request a permission number with their home department. Office Hours will be held early afternoon on Thursdays.

Teaching Method

Lectures, discussion, and hands-on computational labs using real genomic data

Evaluation Method

Weekly exercises, paper discussions, attendance and participation, and final team project

Class Materials (Required)

Students are required to bring a laptop to class for in class activities. We have a Quest allocation that contains all the software and materials needed to run in class exercises.

Class Materials (Suggested)

There is no required textbook but the following book may be helpful for those new to the field: Buffalo, Vance. Bioinformatics Data Skills: Reproducible and Robust Research with Open Source Tools. O'Reilly Media, 2015). Background readings will be supplied from the literature.